PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0277880.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 348aa    MW: 37813.1 Da    PI: 7.7029
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0277880.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.12e-13106150347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++lG+g+W+ Iar +   Rt+ q+ s+ qky
  Lj3g3v0277880.1 106 PWTEEEHRLFLIGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKY 150
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.107.3E-4321IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129421.18399155IPR017930Myb domain
SuperFamilySSF466895.98E-17101156IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-18102154IPR006447Myb domain, plants
SMARTSM007172.6E-10103153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-11103149IPR009057Homeodomain-like
PfamPF002496.4E-11106150IPR001005SANT/Myb domain
CDDcd001675.48E-9106151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGRRCSHCSK ENHNSRTCPS RVGGGARGGG GSGGGGGGVK LFGVRLTDGP IIKKSASMGS  60
LTLSSAHHHY SSSSDPPHEP DEYLSDDPAH ASTFANRRGE RKKGVPWTEE EHRLFLIGLQ  120
KLGKGDWRGI ARNFVVSRTP TQVASHAQKY FIRQSSATRR KRRSSLFDMV TDRSSDPPSV  180
PEEQVLLPPS ENSQPCNGKS QPSLNLSLKS EFEPMETTTE EHVEEDPYET QENGSTPKTP  240
GFFPAYVPVP FSIWPSIAAP CEEVNRGVTF HHEILKPIPV IPKEPVNVDE LVGLSHLSIG  300
ETQVRDREPS PLSLKLLGEP SRQSAFHANA PVSSSDLNSG KNSAIQAV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.127080.0cell culture
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597679.10.0MYB-like transcription factor family protein
TrEMBLG7II010.0G7II01_MEDTR; MYB-like transcription factor family protein
STRINGGLYMA13G43120.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77193346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.13e-95MYB_related family protein